Converts a GFF/GTF file into a proper GTF file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff{:bash}
:file
Annotation file in GFF3/GTF format
*.{gff, gtf}
output_gtf{:bash}
Groovy Map containing sample information
*.agat.gtf{:bash}
Annotation file in GTF format
*.{gtf}
log{:bash}
*.log{:bash}
Log file of the conversion process
*.{log}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
