Generates a FASTA file of chromosome sizes and a fasta index file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA file
*.{fa,fasta,fna,fas}
sizes{:bash}
*.sizes{:bash}
File containing chromosome lengths
*.{sizes}
fai{:bash}
*.fai{:bash}
FASTA index file
*.{fai}
gzi{:bash}
*.gzi{:bash}
Optional gzip index file for compressed inputs
*.gzi
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Tools for dealing with SAM, BAM and CRAM files
