Description

Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing matrix information e.g. [ id:‘test’ ]

tabular{:bash}

:file

Tabular (e.g. TSV or CSV file) containing a numeric matrix with features (e.g. genes) by row and samples by column.

*.{tsv,csv}

Output

name:type
description
pattern

gct{:bash}

meta{:bash}

:map

Groovy Map containing matrix information e.g. [ id:‘test’ ]

*.gct{:bash}

:file

GCT format version of input TSV

*.{gct}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

tabulartogseagct

Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA

https://github.com/nf-core/modules/blob/master/modules/nf-core/custom/tabulartogseagct/main.nf
included in
differentialabundance
maintainer
Github user pinin4fjords
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