Extracts per-base methylation metrics from alignments
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
BAM/CRAM file
*.{bam,cram}
meta2:map
bai:file
BAM/CRAM index file
*.{bai,crai}
meta3:map
fasta:file
Input genome fasta file
*.{fasta,fa}
meta4:map
fai:file
FASTA index file
*.{fai}
bedgraph
*.bedGraph:file
bedGraph file, containing per-base methylation metrics
*.bedGraph
methylkit
*.methylKit:file
methylKit file, containing per-base methylation metrics
*.methylKit
versions
versions.yml:file
File containing software versions
versions.yml
Methylation caller from MethylDackel, a (mostly) universal methylation extractor for methyl-seq experiments.
